To run services use:

java -classpath .:options.jar:axis-ant.jar:axis-schema.jar:axis.jar:commons-discovery-0.2.jar:commons-logging-1.0.4.jar:jaxrpc.jar:log4j-1.2.8.jar:saaj.jar:wsdl4j-1.5.1.jar:mail.jar:activation.jar VcclabALOGPS -f smi FILE_SMILES output.xml

where FILE_SMILES is file with molecules in SMILES format

on Windows run it as:

java -classpath .;options.jar;axis-ant.jar;axis-schema.jar;axis.jar;commons-discovery-0.2.jar;commons-logging-1.0.4.jar;jaxrpc.jar;log4j-1.2.8.jar;saaj.jar;wsdl4j-1.5.1.jar;mail.jar;activation.jar VcclabALOGPS -f smi FILE_SMILES output.xml

